SNP Profiles matching POUND 5 /C

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
1._POUND_5_/C
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
2._POUND_5_/C
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
3._POUND_5_/C
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
4._GC-08-165-4-08
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
5._GC-08-165-4-08
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
6._GC-08-165-4-08
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
7._GC-08-165-4-08
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
8._POUND_5_/C
CCAAGGTTTTTTTTCC_AAGGCCGGTT
9._RUQ_468
_AAGGTT__TT____CCGG_
10._RUQ_897
_AACGTT__TT____CCGG_
11._RUQ_801
_AAGGTT__TT____CCGG_
12._RUQ_1587
_AAGGTT__TT____CCGG_
13._NA_286
CCAAGGTTTTTTTTCCCCAAAACCGGTT
14._GC-01-101-5-18
CCAAGGTTTTTTTTCCCCAAAACCGGTT
15._NA_286
CCAAGGTTTTTTTTCCCCAAAACCGGTT
16._NA_286
CCAAGGTTTTTT_CCCCAAAACCGGTT
17._GC-01-101-5-18
CCAAGGTTTTTT_CCCCAAAACCGGTT
18._MARPER_38
CCAACGTT-TT-CC-AAAG-GGTT
19._RUQ_515
_AACGTT__TT____CCAG_
20._POUND_2_/A
CCAACCTTTTTTTTCCCCAAAGCCGGTT
21._POUND_2_/A
CCAACCTTTTTTTTCCCCAAAGCCGGTT
22._POUND_2_/A
CCAACCTTTTTTTTCCCCAAAGCCGGTT
23._POUND_2_/A
CCAACCTTTTTTTTCCCCAAAGCCGGTT
24._POUND_2_/A
CCAACCTTTTTTTTCCCCAAAGCCGGTT
25._POUND_2_/A
CCAACCTTTTTTTTCCCCAAAGCCGGTT
26._GC-01-093-5-10
CCAACCTTTTTTTTCCCCAAAGCCGGTT
27._GC-01-093-5-10
CCAACCTTTTTTTTCCCCAAAGCCGGTT
28._GC-01-093-5-10
CCAACCTTTTTTTTCCCCAAAGCCGGTT
29._GC-01-093-5-10
CCAACCTTTTTTTTCCCCAAAGCCGGTT
30._GC-01-093-5-10
CCAACCTTTTTTTTCCCCAAAGCCGGTT
31._GC-01-093-5-10
CCAACCTTTTTTTTCCCCAAAGCCGGTT
32._POUND_2_/A
CCAACCTTTTTTTTCC_AAAGCCGGTT
33._POUND_25_/A
CCAACCTTTTTTTTCC_AAAGCCGGTT
34._RUQ_1588
_AACGTT__TT____CCAG_
35._RUQ_1334
_AACCTT__TT____CCGG_
36._RUQ_877
_AACCTT__TT____CCGG_
37._MARPER_28
CCAACCTT-TT-CC-AAAG-GGTT
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCAAGGGGCTCCAA
1._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
2._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
3._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
4._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
5._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
6._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
7._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
8._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
9._RUQ_468
___CCGGGG_CCAAGGGGCTCCAA
10._RUQ_897
___CCGGGG_CCAAGGGGCTCCAA
11._RUQ_801
___CCGGGG_CCAAGGGGCCCCAA
12._RUQ_1587
___CCGGGG_CCAAGGGGCCCCAA
13._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
14._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
15._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
16._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
17._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
18._MARPER_38
AAGG-CC-GGAACC-GG-CTCCAA
19._RUQ_515
___CCGGGG_CCAAGGGGTTCCAA
20._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
21._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
22._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
23._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
24._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
25._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
26._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
27._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
28._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
29._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
30._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
31._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
32._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
33._POUND_25_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
34._RUQ_1588
___CCGGGG_CCAAGGGGTTCCAA
35._RUQ_1334
___CCCGGG_CCAAGGGGTTCCAA
36._RUQ_877
___CCCGGG_CCAAGGGG-CCAA
37._MARPER_28
AAGG-CC-GGAACC-GG-TTCCAA
 2930313233343536373839   
_Input profile
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
1._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
2._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
3._POUND_5_/C
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
4._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
5._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
6._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
7._GC-08-165-4-08
GGAACCAGCCAACCGGCCTTGGX_XX_XX_X
8._POUND_5_/C
GGAACCAG_AACCGGCCTTGGX_XX_XX_X
9._RUQ_468
_AACCAACCAACCGGCC__X_XX_XX_X
10._RUQ_897
_AACCAACCAACCGGCC__X_XX_XX_X
11._RUQ_801
_AACCAACCAACCGGCC__X_XX_XX_X
12._RUQ_1587
_AACCAACCAACCGGCC__X_XX_XX_X
13._NA_286
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
14._GC-01-101-5-18
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
15._NA_286
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
16._NA_286
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
17._GC-01-101-5-18
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
18._MARPER_38
GG-CCAA---GG-TT-X_XX_XX_X
19._RUQ_515
_AACCAGCCAACCGGCC__X_XX_XX_X
20._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
21._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
22._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
23._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
24._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
25._POUND_2_/A
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
26._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
27._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
28._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
29._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
30._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
31._GC-01-093-5-10
GGAACCAACCAACCGGCCTTGGX_XX_XX_X
32._POUND_2_/A
GGAACCAA_AACCGGCCTTGGX_XX_XX_X
33._POUND_25_/A
GGAACCAA_AACCGGCCTTGGX_XX_XX_X
34._RUQ_1588
_AACCAACCAACCGGCC__X_XX_XX_X
35._RUQ_1334
_AACCAGCCAACCGGCC__X_XX_XX_X
36._RUQ_877
_AACCAACCAACCGGCC__X_XX_XX_X
37._MARPER_28
GG-CCAA---GG-TT-X_XX_XX_X

Input profile: POUND_5_/C

 
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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

1._POUND_5_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._POUND_5_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

3._POUND_5_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

4._POUND_5_/C GC-08-165-4-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._POUND_5_/C GC-08-165-4-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._POUND_5_/C GC-08-165-4-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._POUND_5_/C GC-08-165-4-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._POUND_5_/C

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

9._NA_756 RUQ_468

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._CRU_70 RUQ_897

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._NA_149 RUQ_801

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._NA_702 RUQ_1587

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._NA_286

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

14._NA_286 GC-01-101-5-18

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._NA_286

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

16._NA_286

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._NA_286 GC-01-101-5-18

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

18._MARPER_38

94 %
25 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

19._IMC_27 RUQ_515

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

21._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

22._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

23._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

24._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

25._POUND_2_/A

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

26._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

27._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

30._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

31._POUND_2_/A GC-01-093-5-10

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

32._POUND_2_/A

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

33._POUND_25_/A

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

34._NA_710 RUQ_1588

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._NA_916 RUQ_1334

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

36._CRU_100 RUQ_877

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._MARPER_28

90 %
25 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25